http://www.2gnt.com/index.php?d=ECU_Pinout

Use these links as a guide. You said the car is a 95 right?...and you put a junkyard motor in it right? If you didn't know, some of the cars sensors pinouts vary in pin design (flat pin vs. round pin). So you can see how the wiring can get a bit confusing.

Regardless of year, you should go by wire COLOR. You sound like you know what you're doing when you were describing the wire colors with the crank sensor. Most likely you need to test the circuit completely and check for faulty wiring. My guess is a ground is being interrupted somewhere due to faulty/brittle wiring or loose connector wiring between the crank sensor and the coil plug.

I contributed to the Wiki.