OK, Got the CEL codes read today,
here we go:

P1390
Octane Adjust Pin Out of Self Test Range

P0172
The PCM has determined that during testing, the fuel system for bank 1 was too rich. (Bank 1 identifies the location of cylinder 1, while bank 2 indentifies the cylinders on the opposite bank)

The person at auto zone looked up the codes in his book and said it was one of the following:
MAP Sensor, Oxygen Sensor, and/ or Ignition Misfire

Ok, so now I ask, WTF does the first code I put up there mean, and given that my air/fuel gage reads out normally, does that mean that my O2 sensor is ok?
Is the bad MAP possibly caused by the S-AFC II? I have driven on a backup map, and let me tell you, you will know what it is immediately, so I think that my MAP is ok.
That last one, ignition misfire has got me stumped however. I assume that is from the engine knock, causing it to throw that code.

So, given these check engine lights, what more advice can I get?

Thanks for the help, keep it coming.

Built block.
Refinished head.
Tuned suspension.
TURBO.