I know I'm a bit late, but you should've held off a couple months for MS3... gonna be the shit! As far as tuning programs, MT will not work with MS3 (for future reference), and the new TS is awesome with the VE Live with Lambda delay. Also has a 'Lite' mode that uses less resources, as TS did seem to drag my laptop battery down 400,000,000 times faster than MT. It's Java based, nice to use, it's my new go-to.

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'95 GS w/ t3/t4b
FMIC, diy piping & RFL BOV
MS2-Extra Fuel&Spark
50 lb/hr Holley injectors w/ 1:1 RRFPR
JE 8.8:1 dish w/ Hastings Rings
Eagle Rods w/ ARP bolts
ARP Head studs
Mild port/polish head
3" custom DP/cat section, 3" PIT catback
dual MBC - 12 psi / 20psi