Well after a day of driving it around a playing with settings, I've got it to run better. So this is what my settings look likes now ...

Lo
1k - -10%
2k - -8%
3k - -6%
4k - -4%
5k - -2%

Hi settings I haven't really messed with. I've let me cam gears sitting at 0*/0*. I went ahead and reserved some dyno time to go mess with the whole thing after my car comes back from the body shop. I'll probably mess with the AFC settings some more before then. My WOT o2 readings are still very high ... 3rd gear pull never goes below .97.