Yea, be sure you check your timing with a light. If you either unplug your injectors or hold the (calibrated) throttle all the way down (flood clear mode), you won't fuel the car. You want the car to spark but not fire.

You might make sure you can spin the engine by hand first w/o the starter, to be sure your timing is not WAY off.

Once you check it, you should get 0 degrees with 0 offset. If you have to change the offset, be sure you know why it differs from what it should be (i.e. using a non factory trigger wheel or something). The stock 420A style hall crank pos sensor should be 0 degrees of timing at 0 degrees offset once MS has decoded it properly. You did tell it your timing (crank) trigger source, correct? Mine is "420A", though I'm not 100% sure the 2.4 motors use the same thing.